crm_amir

Usage of the crm_multilayer script

class FixedRod

Bases: object

RodAgent which is based on the RodAgent class.

It applies a fixed value to the first vertex of the rod and ensures that vertices can only move along a one-dimensional line when inside the nanochamber given by the block_size value.

agent

block_size

domain_size

class Parameters

Bases: object

Contains all parameters required for the simulation

block_size: Size for which to block movement along additional coordinate

damping: Damping constant

domain_size: Overall Domain Size

drag_force: Drag force exerted by the flow

dt: Time increment for solving the equations

growth_rate: Growth rate of the rod

n_vertices: Number of vertices to use for Rod

rod_length: Overall starting length of the rod

rod_rigiditiy: Rigidity of the rod

save_interval: Interval in which to save Agent data

show_progressbar: Show/hide progressbar during solving of simulation

spring_tension: Tension with which the segment lengths are enforced

t_max: Maximum simulation time

crm_amir_main()

run_sim(parameters, initial_pos=None)