References
Have a look at the presentation which I gave at the seminar of Jens Timmer or at the short presentation which summarizes the project.
Jonas Pleyer. cellular_raza. December 2023. URL: https://github.com/jonaspleyer/cellular_raza.
Stéfan van der Walt, Johannes L. Schönberger, Juan Nunez-Iglesias, François Boulogne, Joshua D. Warner, Neil Yager, Emmanuelle Gouillart, and Tony Yu. Scikit-image: image processing in python. PeerJ, 2:e453, June 2014. URL: http://dx.doi.org/10.7717/peerj.453, doi:10.7717/peerj.453.
C. Sullivan and Alexander Kaszynski. Pyvista: 3d plotting and mesh analysis through a streamlined interface for the visualization toolkit (vtk). Journal of Open Source Software, 4(37):1450, May 2019. URL: http://dx.doi.org/10.21105/joss.01450, doi:10.21105/joss.01450.
G. Bradski. The OpenCV Library. Dr. Dobb's Journal of Software Tools, 2000.
Ariel Amir, Farinaz Babaeipour, Dustin B. McIntosh, David R. Nelson, and Suckjoon Jun. Bending forces plastically deform growing bacterial cell walls. Proceedings of the National Academy of Sciences, 111(16):5778–5783, April 2014. URL: http://dx.doi.org/10.1073/pnas.1317497111, doi:10.1073/pnas.1317497111.
André Zapun, Thierry Vernet, and Mariana G. Pinho. The different shapes of cocci. FEMS Microbiology Reviews, 32(2):345–360, March 2008. URL: http://dx.doi.org/10.1111/j.1574-6976.2007.00098.x, doi:10.1111/j.1574-6976.2007.00098.x.
Kevin D. Young. The selective value of bacterial shape. Microbiology and Molecular Biology Reviews, 70(3):660–703, September 2006. URL: http://dx.doi.org/10.1128/mmbr.00001-06, doi:10.1128/mmbr.00001-06.
Cyrille Billaudeau, Arnaud Chastanet, Zhizhong Yao, Charlène Cornilleau, Nicolas Mirouze, Vincent Fromion, and Rut Carballido-López. Contrasting mechanisms of growth in two model rod-shaped bacteria. Nature Communications, June 2017. URL: http://dx.doi.org/10.1038/ncomms15370, doi:10.1038/ncomms15370.
T.C. Lee, R.L. Kashyap, and C.N. Chu. Building skeleton models via 3-d medial surface axis thinning algorithms. CVGIP: Graphical Models and Image Processing, 56(6):462–478, November 1994. URL: http://dx.doi.org/10.1006/cgip.1994.1042, doi:10.1006/cgip.1994.1042.
Wikipedia. Ramer–Douglas–Peucker algorithm — Wikipedia, the free encyclopedia. http://en.wikipedia.org/w/index.php?title=Ramer%E2%80 %93Douglas%E2%80%93Peucker%20algorithm&oldid=1240652384, 2024. [Online; accessed 27-October-2024].
Wikimedia Commons. Category:microscopic images of escherichia coli. 2023. URL: https://commons.wikimedia.org/wiki/Category:Microscopic_images_of_Escherichia_coli.
M. Knoll and E. Ruska. Beitrag zur geometrischen elektronenoptik. i. Annalen der Physik, 404(5):607–640, January 1932. URL: http://dx.doi.org/10.1002/andp.19324040506, doi:10.1002/andp.19324040506.