References
Have a look at the presentation which I gave at the seminar of Jens Timmer or at the short presentation which summarizes the project.
Jonas Pleyer. cellular_raza. December 2023. URL: https://github.com/jonaspleyer/cellular_raza.
Stéfan van der Walt, Johannes L. Schönberger, Juan Nunez-Iglesias, François Boulogne, Joshua D. Warner, Neil Yager, Emmanuelle Gouillart, and Tony Yu. Scikit-image: image processing in python. PeerJ, 2:e453, June 2014. URL: http://dx.doi.org/10.7717/peerj.453, doi:10.7717/peerj.453.
C. Sullivan and Alexander Kaszynski. Pyvista: 3d plotting and mesh analysis through a streamlined interface for the visualization toolkit (vtk). Journal of Open Source Software, 4(37):1450, May 2019. URL: http://dx.doi.org/10.21105/joss.01450, doi:10.21105/joss.01450.
G. Bradski. The OpenCV Library. Dr. Dobb's Journal of Software Tools, 2000.
André Zapun, Thierry Vernet, and Mariana G. Pinho. The different shapes of cocci. FEMS Microbiology Reviews, 32(2):345–360, March 2008. URL: http://dx.doi.org/10.1111/j.1574-6976.2007.00098.x, doi:10.1111/j.1574-6976.2007.00098.x.
Kevin D. Young. The selective value of bacterial shape. Microbiology and Molecular Biology Reviews, 70(3):660–703, September 2006. URL: http://dx.doi.org/10.1128/mmbr.00001-06, doi:10.1128/mmbr.00001-06.
Cyrille Billaudeau, Arnaud Chastanet, Zhizhong Yao, Charlène Cornilleau, Nicolas Mirouze, Vincent Fromion, and Rut Carballido-López. Contrasting mechanisms of growth in two model rod-shaped bacteria. Nature Communications, June 2017. URL: http://dx.doi.org/10.1038/ncomms15370, doi:10.1038/ncomms15370.
T.C. Lee, R.L. Kashyap, and C.N. Chu. Building skeleton models via 3-d medial surface axis thinning algorithms. CVGIP: Graphical Models and Image Processing, 56(6):462–478, November 1994. URL: http://dx.doi.org/10.1006/cgip.1994.1042, doi:10.1006/cgip.1994.1042.
Wikipedia. Ramer–Douglas–Peucker algorithm — Wikipedia, the free encyclopedia. http://en.wikipedia.org/w/index.php?title=Ramer%E2%80 %93Douglas%E2%80%93Peucker%20algorithm&oldid=1240652384, 2024. [Online; accessed 27-October-2024].
Wikimedia Commons. Category:microscopic images of escherichia coli. 2023. URL: https://commons.wikimedia.org/wiki/Category:Microscopic_images_of_Escherichia_coli.
M. Knoll and E. Ruska. Beitrag zur geometrischen elektronenoptik. i. Annalen der Physik, 404(5):607–640, January 1932. URL: http://dx.doi.org/10.1002/andp.19324040506, doi:10.1002/andp.19324040506.