Image-Generation

Comparing Microscopic Images

Electron Microscopy Electron Microscopy
Light Microscopy (1) Light Microscopy (1)
Light Microscopy (2) Light Microscopy (2)

There exist a great variety of microscopes which generate differing images [11]. For our interests, images taken by Electron Microscopes [12] can not be taken into account since the imaging process kills the bacteria and thus no dynamics can be captured.

  • Microscopic images

  • Surface of the Cell

List of Imaging Efects

Effects Introduced by Light Microscopes

Effect

CG Equivalent

Description

Sensory Noise

Uniform noise at each pixel

Sensors are noisy?

“Smudges”

Distortion Layers

Persistent across single time-series

Lensing

Angle of Lighting

Intensity

Indirect Lighting/Refraction

Optical Aberration

3D Rendering

  • Which effects can we capture with that?

Calculating Masks

  • parallel projection

  • maybe switch to something less calculation-instense (such as matplotlib)

    • can we still trust that the generated image and the masks match?